Friday, 26 October 2007
Slightly delayed release
During testing of the next forthcoming release I have found a few cases where XIA2 works rather badly for nasty cases - e.g. gets stuck in a loop. The release 0.2.6.3 will come once I have fixed these, hopefully next week...
Tuesday, 16 October 2007
User interface
*finally* I have gotten around (with a great deal of help from Pete briggs) to putting together a CCP4i interface to xia2. This means no more messing around on the command line - you can just type everything into the GUI.
This will be included in CCP4 6.1 but may also be available before then...
This will be included in CCP4 6.1 but may also be available before then...
Monday, 15 October 2007
xia2 for the *truly* lazy / busy
So, quite a few users have complained about the pain and suffering required to write the input file. Well, I have done away with it now then. You can still keep it - and I would advise this - but if you don't want to bother then you can try:
xia2 /path/to/images
and it will do it's best. If you are feeling slightly charitable you can give some clues:
xia2 -project SG901 -crystal X66252 -atom Se /path/to/images
If you have MAD data, it will pick this up. If you have multiple passes, it will pick this up. If you have SAD data you *have* to give it an atom else I don't know. You are allowed to lie.
If xia2 screws up just edit automatic.xinfo and you should be fine.
Usual commandline options like -debug -2d -3d -parallel etc still work.
xia2 /path/to/images
and it will do it's best. If you are feeling slightly charitable you can give some clues:
xia2 -project SG901 -crystal X66252 -atom Se /path/to/images
If you have MAD data, it will pick this up. If you have multiple passes, it will pick this up. If you have SAD data you *have* to give it an atom else I don't know. You are allowed to lie.
If xia2 screws up just edit automatic.xinfo and you should be fine.
Usual commandline options like -debug -2d -3d -parallel etc still work.
Wednesday, 3 October 2007
XDS versions
The latest version of XDS (well, XSCALE really) seems to demand a slightlyt different format of XSCALE.INP file - I am working on this and will publish a patch here (and on the mailing list) as soon as I have one...
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