So - sometimes people use an alias in their shell to point at programs rather thank tinkering with their path. I have to warn you that xia2 is not smart enough to "get" this - so for instance aliasing xds rather than putting it in your path will stop xia2 -3d from working.
If someone would like to look into fixing this, please feel free to get in touch. Until then, you have been warned ;o)
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